Triphasic Undulating Periodization

Simply do 5/3/1.  It's a simpler way of doing what's written in that pdf.  :3

I have his book, the first and 2nd addition as well as 5/3/1 for powerlifters.

Jim's simply a man.  And I don't think he'll call you a pussy. 

Jim simply wants you to be strong. Because lifting heavy for him is a lifetime pursuit.  I mean if you're not going to compete in a competition, 5/3/1 will set you for life.

http://www.t-nation.com/free_online_article/sports_body_training_performance/how_to_build_pure_strength

Well get ready for some "unorthodox" numbers but the max's from this block
 
BW+40 lbs x 3 Feet and Hand Elevated Pushup (with a plus)
Reverse Lunge (Testing today) Probably 140 x 5
but I'm not sure I'll be able to get 70 on each dumbbell so it might just have to get tested as 130 with slower eccentrics

Last Block
BW+40 lbs x 3 Neutral Grip Chin Up
Front Foot Elevated Bulgarian SS w/ pause at bottom ~2-3 seconds BW+95 lbs x5

Well I think the article is complicated if for no other reason because Cal doesn't seem great at communicating, but that's not his job. Also I'm not sure if the loading principles have to change, I can still work off of percentages calculated by incorporation of bodyweight (exrx has some formulas).

The big 3 aren't really an option just because the weight I have available to me is limited(and there's no rack for the barbell, just a barbell), so I've had to choose exercises that are inherently so difficult or incorporate your bodyweight in a way that the load is lesser.

My main desire with using the methodology the article talks about is really getting a greater mastery of these three phases of dynamic movement. I know I can just apply 6 second eccentrics and paused lunges and clapping pushups or jumping lunges but I was trying to give some actual matching to the principles of the system rather than JUST the principles of motion.

Well thanks for the very reasonable response. I see what you're saying. My progress really hasn't stalled...at all. In fact besides the third week where the max lifts tend to get into a bit of a grind (but still go up) things have been going really well.

The real meat of why I was thinking of the program was because my curiosity was so piqued by the focus on the different parts of dynamic movement. BUT I'll try and incorporate that into my lifting as a philosophy and not as a complete program for a awhile.

But can't you imagine the benefits of doing a focused isometric, eccentric and concentric block individually? I'd have to be hitting a weak part (or probably 3 weak parts) of my performance somewhere in there.